count how many reads map to each feature
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
input{:bash}
:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
index{:bash}
Contains indexed bam file
*.bai
meta2{:bash}
.gtf file information e.g. [ id:'test' ]
[ id:'test' ]
gtf{:bash}
Contains the features in the GTF format
*.gtf
txt{:bash}
*.txt{:bash}
File containing feature counts output
.txt
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
